Basic Information
Locus ID:
jg36130
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 13862352 | 13871844 | + | jg36130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 94,855.01 Da | 39.66 | 78.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 383 | 437 | 2.27459E-27 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 383 | 439 | 2.6E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 447 | 807 | 6.3E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 370 | 439 | 4.03E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 271 | 808 | 1.21E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 70 | 222 | 2.9E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 256 | 359 | 4.8E-14 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 381 | 825 | 1.8E-225 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 601 | 774 | 1.8E-225 | - |
| SMART | SM00298 | chromo_7 | 382 | 441 | 9.5E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 111 | 237 | 9.8E-9 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 118 | 237 | 14.491821 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 270 | 815 | 44.086742 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 383 | 439 | 13.553001 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 406 | 426 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 453 | 465 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 271 | 287 | 7.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 542 | 555 | 7.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 496 | 510 | 7.3E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 380 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_011089105.1 | DNA (cytosine-5)-methyltransferase CMT3 [Sesamum indicum] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9H0B0 | DNA (Cytosine-5-)-methyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16446 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology