Basic Information
Locus ID:
jg36129
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 13853336 | 13859864 | + | jg36129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 43,656.59 Da | 44.02 | 71.64 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 134 | 171 | 2.05711E-15 | - |
| Pfam | PF03145 | Seven in absentia protein family | 177 | 376 | 3.2E-76 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 188 | 379 | 7.85E-47 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 175 | 1.44E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 240 | 4.8E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 187 | 1.3E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 241 | 377 | 4.6E-35 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 171 | 9.582937 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 188 | 248 | 13.989262 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_011089104.1 | E3 ubiquitin-protein ligase SINAT2-like [Sesamum indicum] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TRM7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105170161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology