Basic Information
Locus ID:
jg36117
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 13770002 | 13770913 | - | jg36117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 33,307.61 Da | 70.02 | 69.80 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 255 | 292 | 1.7387E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 253 | 298 | 5.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 299 | 1.77E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 303 | 2.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 255 | 292 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 255 | 293 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 188 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051113191.1 | uncharacterized protein LOC127239199 [Andrographis paniculata] | 0 |
| TrEMBL | A0A830BX30 | RING-type domain-containing protein OS=Phtheirospermum japonicum OX=374723 GN=PHJA_001030100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology