Basic Information
Locus ID:
jg36049
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 13238339 | 13239556 | - | jg36049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 44,932.46 Da | 49.60 | 106.94 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 59 | 3.48882E-21 | - |
| Pfam | PF04564 | U-box domain | 12 | 83 | 1.2E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 8 | 88 | 5.0E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 100 | 387 | 5.76E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 229 | 391 | 1.7E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 84 | 228 | 1.1E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 83 | 2.6E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 15 | 79 | 1.3E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 86 | 35.243034 | IPR003613 |
| Coils | Coil | Coil | 367 | 387 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011090297.1 | E3 ubiquitin-protein ligase PUB23 [Sesamum indicum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U1D3 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105171006 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology