Basic Information
Locus ID:
jg35947
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 12436857 | 12442378 | + | jg35947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 100,521.78 Da | 54.20 | 69.52 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 830 | 868 | 2.15707E-14 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 828 | 872 | 8.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 829 | 875 | 9.59E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 806 | 881 | 1.1E-11 | IPR013083 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 830 | 869 | 10.645153 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 407 | - | - |
| Coils | Coil | Coil | 756 | 783 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_011088805.1 | uncharacterized protein LOC105169955 isoform X1 [Sesamum indicum] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TV43 | uncharacterized protein LOC105169955 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105169955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology