Basic Information
Locus ID:
jg35873
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 11535456 | 11539258 | + | jg35873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 53,226.60 Da | 59.30 | 84.90 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 269 | 317 | 4.07792E-15 | - |
| Pfam | PF12906 | RING-variant domain | 269 | 316 | 7.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 320 | 9.27E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 253 | 324 | 6.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 268 | 317 | 3.7E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 261 | 323 | 19.272171 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011089303.1 | uncharacterized protein LOC105170304 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TZ39 | uncharacterized protein LOC105170304 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105170304 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology