Basic Information
Locus ID:
jg35797
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 10072042 | 10073926 | + | jg35797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 38,281.61 Da | 36.66 | 88.71 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 4.22522E-77 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 172 | 4.56506E-71 | - |
| Pfam | PF00190 | Cupin | 10 | 155 | 7.1E-29 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 334 | 2.9E-22 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 343 | 5.74E-53 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 1.7E-50 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 194 | 1.5E-33 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 1.8E-35 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 1.6E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 2.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 2.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 2.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 2.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 2.0E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_041993394.1 | glutelin type-D 1-like [Salvia splendens] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9I2G3 | 11S globulin OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03314 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology