Basic Information
Locus ID:
jg35691
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6002186 | 6015178 | - | jg35691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 103,246.70 Da | 43.63 | 83.34 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 2.169E-93 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 223 | 322 | 5.2E-20 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 2.3E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 4.9E-21 | IPR011545 |
| Pfam | PF14493 | Helix-turn-helix domain | 652 | 747 | 3.4E-19 | IPR029491 |
| Pfam | PF00570 | HRDC domain | 547 | 612 | 1.2E-14 | IPR002121 |
| Pfam | PF09382 | RQC domain | 400 | 497 | 1.5E-23 | IPR018982 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 498 | 1.9E-24 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 2.94E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 541 | 618 | 4.58E-18 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 399 | 523 | 6.8E-33 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 1.8E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 398 | 1.0E-54 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 540 | 620 | 5.7E-18 | IPR044876 |
| SMART | SM00487 | ultradead3 | 10 | 205 | 1.2E-29 | IPR014001 |
| SMART | SM00956 | RQC_2 | 404 | 506 | 3.1E-24 | IPR018982 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 2.7E-26 | IPR001650 |
| SMART | SM00341 | hrdc7 | 542 | 622 | 7.7E-7 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 456 | 1.1E-149 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 24.08358 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 376 | 19.352345 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 19.227201 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_011080608.1 | uncharacterized protein LOC105163818 [Sesamum indicum] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9TIK4 | ATP-dependent DNA helicase OS=Sesamum indicum OX=4182 GN=LOC105163818 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology