Basic Information
Locus ID:
jg35463
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2922516 | 2928108 | - | jg35463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 99,581.11 Da | 42.94 | 101.86 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 37 | 237 | 2.39627E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 650 | 870 | 1.51419E-130 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 345 | 627 | 3.85197E-100 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 358 | 577 | 4.7E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 55 | 189 | 3.0E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 669 | 817 | 1.7E-31 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 259 | 3.26E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 643 | 880 | 6.2E-69 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 345 | 632 | 3.27E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 4 | 280 | 2.0E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 314 | 633 | 1.7E-58 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 635 | 887 | 1.2E-83 | IPR027417 |
| SMART | SM00382 | AAA_5 | 64 | 245 | 1.6E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 678 | 863 | 1.3E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 652 | 886 | 17.827263 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 345 | 605 | 36.725544 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 37 | 260 | 22.289024 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 162 | 176 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 335 | - | - |
| Coils | Coil | Coil | 320 | 341 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_011083071.1 | ABC transporter C family member 5-like [Sesamum indicum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8F0ZV81 | ABC-type xenobiotic transporter OS=Rehmannia glutinosa OX=99300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology