Basic Information
Locus ID:
jg35458
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 2895279 | 2898477 | - | jg35458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 106,710.74 Da | 31.47 | 101.99 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 505 | 548 | 2.2E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 178 | 235 | 7.7E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 714 | 804 | 2.5E-13 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 806 | 945 | 4.8E-15 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 563 | 582 | 0.92 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 77 | 5.5E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 249 | 271 | 0.75 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 288 | 600 | 5.34E-62 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 714 | 948 | 3.84E-49 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 84 | 390 | 8.63E-62 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 805 | 967 | 8.0E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 196 | 5.2E-38 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 712 | 799 | 5.8E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 368 | 3.6E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 291 | 3.6E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 369 | 632 | 7.3E-75 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 343 | 367 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 223 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 295 | 318 | 95.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 127 | 151 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 559 | 582 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 439 | 463 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 247 | 271 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 319 | 342 | 180.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 712 | 954 | 18.972788 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 718 | 742 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 947 | 982 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_011080119.1 | MDIS1-interacting receptor like kinase 1 [Sesamum indicum] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9M5 | MDIS1-interacting receptor like kinase 1 OS=Sesamum indicum OX=4182 GN=LOC105163466 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology