Basic Information
Locus ID:
jg35305
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1682508 | 1687046 | + | jg35305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 59,102.31 Da | 52.84 | 91.16 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 114 | 157 | 1.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 114 | 159 | 3.92E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 250 | 430 | 6.67E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 231 | 440 | 8.2E-16 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 109 | 156 | 3.4E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 526 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02760.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_011079865.1 | F-box protein SKIP17 [Sesamum indicum] | 0 |
| Q9SY03 | F-box protein At4g02760 OS=Arabidopsis thaliana OX=3702 GN=At4g02760 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6I9T714 | F-box protein SKIP17 OS=Sesamum indicum OX=4182 GN=LOC105163274 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35305 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027050 |
| Apiaceae | Apium graveolens | 2 | Ag10G00730, Ag10G00731 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004620 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721639, gene-LOC120111042 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.890.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G16624, Ftri9G24326 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G02733.1, AT4G02740.1, AT4G02760.3 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10028579m.g.v1.0, Thhalv10029278m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp6g02700.v2.2, Sp6g02720.v2.2, Sp6g02730.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB04g051180.2N, BniB08g039420.2N, BniB08g039490.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2103 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2218 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1082 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00627, Lb4G25246 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.991, evm.TU.Scaffold_9_RagTag.926 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11356, nbisL1-mrna-21291 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19896, nbisL1-mrna-5637 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18388 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.521, evm.TU.utg000006l.308 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009520, Maker00014118 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1505, nbisL1-mrna-9980 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5134 |
| Salicaceae | Populus euphratica | 2 | populus_peu15048, populus_peu32715 |
| Zosteraceae | Zostera marina | 2 | Zosma06g23090.v3.1, Zosma06g23100.v3.1 |