Basic Information
Locus ID:
jg35285
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PMR5 N terminal Domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1520241 | 1528489 | + | jg35285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 85,166.01 Da | 41.57 | 78.95 | -0.41 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19160.1 | TRICHOME BIREFRINGENCE-LIKE 11. Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | 0 |
| RefSeq | XP_011082551.1 | protein trichome birefringence-like 11 isoform X1 [Sesamum indicum] | 0 |
| Q5BPJ0 | Protein trichome birefringence-like 11 OS=Arabidopsis thaliana OX=3702 GN=TBL11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BJA9 | PMR5N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_021282 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35285, jg37416, jg8814 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2663 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020185 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5024, Sbi_jg6795 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12988 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00440, Sgl05491 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015973, gene:ENSEOMG00000029179 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013860, CQ.Regalona.r1.3BG0013890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028550, pistato.v30028700 |
| Apiaceae | Apium graveolens | 2 | Ag2G02399, Ag9G02160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1810.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G12669, Ftri15G14816 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2241 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04910 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.815 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024753 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3590, BH01.3937, CH01.4201 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0248820, gene-QOZ80_3BG0279440 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_067745, gene-QYE76_067761 |
| Poaceae | Oryza coarctata | 2 | Oco05G013870, Oco06G012490 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g24230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G350100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035010, Chr04G011670, Chr07G011080, Chr12G004610 |
| Poaceae | Zea mays | 1 | Zm00001eb017340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1178 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1693, evm.TU.LG11.1051 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11480 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.963, evm.TU.Scaffold_5_RagTag.964 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11378, nbisL1-mrna-21307 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19907, nbisL1-mrna-7688, nbisL1-mrna-7689 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11583, nbisL1-mrna-18400 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009543 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17308, nbisL1-mrna-20716 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5148, nbisL1-mrna-7587 |
| Salicaceae | Populus euphratica | 5 | populus_peu00202, populus_peu15023, populus_peu17255 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611004 |
| Solanaceae | Solanum chilense | 1 | SOLCI005841100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029282 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4551_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1435 |
| Zosteraceae | Zostera marina | 2 | Zosma01g20630.v3.1, Zosma04g09430.v3.1 |