Basic Information
Locus ID:
jg3525
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2951750 | 2960758 | - | jg3525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 108,885.66 Da | 42.85 | 77.29 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 611 | 651 | 3.04026E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 548 | 595 | 2.1E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 248 | 303 | 3.1E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 612 | 653 | 5.7E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 596 | 653 | 2.04E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 846 | 947 | 8.89E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 691 | 754 | 1.05E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 599 | 681 | 2.3E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 798 | 966 | 7.0E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 696 | 758 | 2.5E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 700 | 757 | 9.9E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 611 | 652 | 5.4E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 609 | 654 | 10.379999 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 612 | 651 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011094567.1 | uncharacterized protein LOC105174236 [Sesamum indicum] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U5S9 | uncharacterized protein LOC105174236 OS=Sesamum indicum OX=4182 GN=LOC105174236 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology