Basic Information
Locus ID:
jg35211
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 1039680 | 1043948 | - | jg35211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 55,533.00 Da | 42.12 | 78.05 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 402 | 9.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 186 | 416 | 1.54E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 503 | 3.8E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 362 | 403 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 211 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 359 | 440.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 178 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011079695.1 | autophagy-related protein 18a [Sesamum indicum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HKN0 | Putative WD40 repeat protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09244 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology