Basic Information
Locus ID:
jg35110
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 383961 | 386548 | + | jg35110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 56,612.24 Da | 63.24 | 53.76 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 364 | 449 | 3.0E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 465 | 496 | 1.9E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 364 | 449 | 1.4E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 285 | - | - |
| Coils | Coil | Coil | 356 | 390 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_011079546.1 | uncharacterized protein LOC105163038 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9T668 | uncharacterized protein LOC105163038 OS=Sesamum indicum OX=4182 GN=LOC105163038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology