Basic Information
Locus ID:
jg34928
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13687143 | 13693564 | - | jg34928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 41,581.35 Da | 58.21 | 79.97 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 161 | 210 | 1.96085E-29 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.23982E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 348 | 390 | 3.71694E-24 | - |
| Pfam | PF00627 | UBA/TS-N domain | 170 | 205 | 1.4E-13 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 271 | 326 | 1.2E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 352 | 387 | 2.0E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.9E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 6.91E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 150 | 210 | 3.23E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 332 | 394 | 4.62E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 267 | 333 | 4.05E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 160 | 210 | 1.8E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 261 | 327 | 2.7E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.0E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 345 | 391 | 2.6E-23 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.9E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 167 | 207 | 1.3E-5 | IPR015940 |
| SMART | SM00727 | CBM | 269 | 312 | 8.0E-8 | IPR006636 |
| SMART | SM00165 | uba_6 | 352 | 389 | 1.8E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 395 | 2.8E-116 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 165 | 208 | 12.546894 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 349 | 390 | 14.763827 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.958031 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 378 | 393 | 9.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 377 | 9.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 297 | 319 | 9.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 362 | 9.9E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 244 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020547636.1 | ubiquitin receptor RAD23c-like [Sesamum indicum] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9GKX7 | Ubiquitin receptor RAD23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21504 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology