Basic Information
Locus ID:
jg34868
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13230302 | 13236437 | + | jg34868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 90,384.76 Da | 44.10 | 80.80 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 95 | 291 | 2.25296E-100 | - |
| Pfam | PF00183 | Hsp90 protein | 273 | 768 | 7.5E-191 | IPR001404 |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 109 | 269 | 4.9E-12 | IPR003594 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 343 | 601 | 2.58E-88 | IPR020568 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 86 | 301 | 4.32E-62 | IPR036890 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 623 | 744 | 4.18E-33 | IPR037196 |
| Gene3D | G3DSA:3.30.230.80 | - | 341 | 513 | 3.5E-74 | - |
| Gene3D | G3DSA:3.40.50.11260 | - | 514 | 600 | 7.9E-31 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 72 | 316 | 3.5E-91 | IPR036890 |
| Gene3D | G3DSA:1.20.120.790 | - | 601 | 748 | 2.9E-52 | IPR037196 |
| SMART | SM00387 | HKATPase_4 | 108 | 270 | 9.6E-7 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 29 | 790 | 1.1E-239 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 106 | 115 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 174 | 191 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 277 | 295 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 203 | 225 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 107 | 129 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 258 | 275 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 86 | 106 | 8.3E-66 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 156 | 173 | 8.3E-66 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 76 | 745 | 26.089462 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 327 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | XP_011101956.1 | heat shock protein 90-5, chloroplastic-like [Sesamum indicum] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9V2F6 | heat shock protein 90-5, chloroplastic-like OS=Sesamum indicum OX=4182 GN=LOC105179995 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology