Basic Information
Locus ID:
jg34808
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 12841125 | 12841901 | + | jg34808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 29,619.92 Da | 48.51 | 91.78 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 43 | 82 | 3.2E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 102 | 9.19E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 133 | 2.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 97 | 0.0098 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 98 | 10.128798 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 62 | 71 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051146293.1 | uncharacterized protein LOC127261905 [Andrographis paniculata] | 0 |
| TrEMBL | A0A2G9GBV1 | RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25023 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology