Basic Information
Locus ID:
jg34802
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 12785189 | 12794097 | + | jg34802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 69,606.83 Da | 36.09 | 92.80 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 551 | 621 | 6.36194E-30 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 550 | 619 | 3.2E-27 | IPR020189 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 208 | 0.0049 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 380 | 3.05E-34 | IPR036322 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 551 | 621 | 8.57E-24 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 480 | 558 | 3.11E-26 | IPR008991 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 409 | 6.8E-57 | IPR015943 |
| Gene3D | G3DSA:2.40.50.140 | - | 551 | 623 | 2.9E-32 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 466 | 550 | 1.0E-42 | IPR014722 |
| SMART | SM00320 | WD40_4 | 297 | 346 | 0.2 | IPR001680 |
| SMART | SM01376 | eIF_5a_2 | 550 | 619 | 9.1E-33 | IPR020189 |
| SMART | SM00320 | WD40_4 | 349 | 387 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 126 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 208 | 0.0039 | IPR001680 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 484 | 618 | 1.0E-38 | IPR001884 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 208 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 176 | 208 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 355 | 8.971213 | IPR001680 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 515 | 522 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69400.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_042055864.1 | mitotic checkpoint protein BUB3.3-like [Salvia splendens] | 0 |
| P24922 | Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P4ND61 | mitotic checkpoint protein BUB3.3-like OS=Gossypium arboreum OX=29729 GN=LOC108477829 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology