Basic Information
Locus ID:
jg34626
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11362783 | 11365593 | + | jg34626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 26,375.54 Da | 58.91 | 79.92 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 61 | 238 | 4.09093E-93 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 60 | 168 | 5.2E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 63 | 193 | 5.23E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 45 | 238 | 5.7E-68 | - |
| SMART | SM00232 | pad1_6 | 63 | 191 | 2.7E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 64 | 194 | 26.683527 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_011086575.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Sesamum indicum] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GYH4 | Proteasome endopeptidase complex OS=Handroanthus impetiginosus OX=429701 GN=CDL12_17083 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology