Basic Information
Locus ID:
jg34547
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10559942 | 10565684 | - | jg34547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 161,843.73 Da | 37.56 | 105.03 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1192 | 1412 | 9.43569E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 578 | 781 | 5.87257E-94 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 879 | 1169 | 7.33944E-74 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 266 | 553 | 7.99547E-95 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 265 | 532 | 3.4E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1211 | 1359 | 5.2E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 602 | 733 | 1.9E-13 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 884 | 1121 | 3.0E-25 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 574 | 795 | 2.17E-49 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1186 | 1423 | 4.35E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 258 | 557 | 9.68E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 880 | 1174 | 4.58E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 556 | 817 | 6.8E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1177 | 1430 | 2.6E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 843 | 1174 | 2.6E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 255 | 555 | 2.1E-42 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1220 | 1403 | 6.4E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 607 | 781 | 3.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 265 | 545 | 32.551968 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 580 | 804 | 19.801376 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 881 | 1157 | 33.23267 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1194 | 1428 | 17.647192 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 706 | 720 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_020551253.1 | putative ABC transporter C family member 15 [Sesamum indicum] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TT06 | ABC-type xenobiotic transporter OS=Sesamum indicum OX=4182 GN=LOC105168369 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology