Basic Information
Locus ID:
jg34512
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10272176 | 10273614 | + | jg34512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 42,010.66 Da | 51.34 | 76.07 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 312 | 352 | 7.0E-8 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 101 | 3.01E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 107 | 232 | 3.53E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 310 | 357 | 5.93E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 89 | 243 | 2.8E-19 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 301 | 358 | 1.4E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 310 | 352 | 11.058215 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 384 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_011086787.1 | F-box protein At1g67340-like [Sesamum indicum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H8Z2 | MYND-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_13376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology