Basic Information
Locus ID:
jg3439
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2227415 | 2239606 | + | jg3439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 186,678.94 Da | 46.86 | 89.75 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1153 | 1536 | 2.03514E-110 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1199 | 1538 | 5.7E-77 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1147 | 1537 | 1.14E-90 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 527 | 1.59E-32 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1433 | 1543 | 5.0E-30 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1104 | 1332 | 2.6E-41 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 83 | 535 | 1.1E-46 | IPR011989 |
| SMART | SM00119 | hect_3 | 1165 | 1543 | 4.9E-78 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1167 | 1549 | 57.01738 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1590 | 1621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1597 | 1613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 844 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_011094716.1 | E3 ubiquitin-protein ligase UPL4 isoform X1 [Sesamum indicum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9U655 | HECT-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105174342 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology