Basic Information
Locus ID:
jg34378
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5479981 | 5491768 | + | jg34378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 98,206.52 Da | 70.56 | 62.81 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 804 | 844 | 2.69794E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 802 | 849 | 1.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 804 | 850 | 6.06E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 855 | 4.3E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 805 | 844 | 10.718918 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 208 | - | - |
| Coils | Coil | Coil | 735 | 755 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011101524.1 | uncharacterized protein LOC105179586 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9UIF4 | uncharacterized protein LOC105179586 OS=Sesamum indicum OX=4182 GN=LOC105179586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology