Basic Information
Locus ID:
jg34215
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2730726 | 2731928 | + | jg34215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 43,129.17 Da | 73.36 | 55.33 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 203 | 244 | 1.12359E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 277 | 380 | 3.9E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 5 | 36 | 3.8E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 202 | 244 | 2.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 250 | 1.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 250 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 243 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 244 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 87 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_011085033.2 | probable E3 ubiquitin-protein ligase RHC2A [Sesamum indicum] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TIN1 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105167139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology