Basic Information
Locus ID:
jg34167
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 2330396 | 2333037 | + | jg34167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 25,167.71 Da | 47.82 | 72.60 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 108 | 160 | 9.44721E-12 | - |
| Pfam | PF12906 | RING-variant domain | 108 | 159 | 3.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 162 | 1.68E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 167 | 1.4E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 107 | 160 | 7.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 100 | 166 | 17.69359 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 81 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011084971.1 | uncharacterized protein LOC105167095 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9G1U2 | RING-CH-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28645 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology