Basic Information
Locus ID:
jg34057
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SPT2 chromatin protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1392584 | 1394910 | - | jg34057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 42,139.44 Da | 40.63 | 61.52 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08243 | SPT2 chromatin protein | 285 | 373 | 2.7E-13 | IPR013256 |
| SMART | SM00784 | spt2 | 281 | 373 | 4.9E-8 | IPR013256 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 100 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37860.2 | - | 0 |
| RefSeq | XP_011085117.1 | uncharacterized protein LOC105167192 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TV24 | uncharacterized protein LOC105167192 OS=Sesamum indicum OX=4182 GN=LOC105167192 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 9 | jg27307, jg27308, jg27310, jg27311, jg27356, jg27357 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2019.V1.1 |
| Plantaginaceae | Plantago ovata | 13 | Pov_00000234, Pov_00000235, Pov_00000236, Pov_00006650 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006708900 |