Basic Information
Locus ID:
jg34021
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1134418 | 1136617 | + | jg34021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 20,644.90 Da | 42.56 | 101.69 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 85 | 179 | 1.7E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 83 | 180 | 1.83E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 67 | 182 | 4.9E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 85 | 179 | 1.1E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 82 | 180 | 1.0E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 107 | 122 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 83 | 96 | 1.2E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 118 | 133 | 1.2E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 140 | 154 | 1.2E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 81 | 180 | 18.399542 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011101129.1 | 40S ribosomal protein S20-2 [Sesamum indicum] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8LRM8 | 40S ribosomal protein S20-2-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107930161 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology