Basic Information
Locus ID:
jg33997
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 969832 | 975126 | + | jg33997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 33,843.41 Da | 48.41 | 76.79 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 249 | 289 | 3.15208E-17 | - |
| Pfam | PF13639 | Ring finger domain | 248 | 290 | 9.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 229 | 293 | 1.36E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 296 | 7.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 249 | 289 | 8.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 290 | 12.076194 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55530.1 | RING/U-box superfamily protein. Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. | 0 |
| RefSeq | XP_011101177.1 | E3 ubiquitin ligase BIG BROTHER-like isoform X2 [Sesamum indicum] | 0 |
| P0DPR2 | E3 ubiquitin-protein ligase RNF43 OS=Xenopus tropicalis OX=8364 GN=rnf43 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9V0Q6 | E3 ubiquitin ligase BIG BROTHER-like isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105179259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology