Basic Information
Locus ID:
jg33991
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 931213 | 935730 | - | jg33991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 55,285.42 Da | 52.81 | 78.23 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 221 | 246 | 0.0016 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 204 | 3.1E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 15 | 75 | 6.0E-7 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 273 | 2.39E-45 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 375 | 6.06E-6 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 137 | 6.1E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 143 | 280 | 4.0E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 3.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 1.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 0.001 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 0.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.1E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.203901 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 133 | 8.667035 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 9.728291 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.31873 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.79301 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.00757 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 204 | 10.258919 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 133 | 8.68292 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 10.28552 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 487 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_011076205.1 | E3 ubiquitin-protein ligase XBAT33 [Sesamum indicum] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SZB3 | E3 ubiquitin-protein ligase XBAT33 OS=Sesamum indicum OX=4182 GN=LOC105160503 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology