Basic Information
Locus ID:
jg33959
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 696022 | 700072 | - | jg33959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 39,525.85 Da | 26.02 | 88.14 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 25 | 116 | 4.4E-6 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 129 | 188 | 7.6E-11 | IPR001404 |
| Pfam | PF00183 | Hsp90 protein | 216 | 339 | 2.6E-47 | IPR001404 |
| Pfam | PF00183 | Hsp90 protein | 190 | 214 | 1.5E-6 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 190 | 323 | 1.9E-38 | IPR020568 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 6 | 158 | 4.61E-37 | IPR036890 |
| Gene3D | G3DSA:3.30.565.10 | - | 121 | 173 | 6.0E-7 | IPR036890 |
| Gene3D | G3DSA:3.30.230.80 | - | 189 | 212 | 3.1E-5 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 5 | 120 | 1.8E-37 | IPR036890 |
| Gene3D | G3DSA:3.40.50.11260 | - | 213 | 320 | 2.1E-39 | - |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 87 | 104 | 3.0E-33 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 69 | 86 | 3.0E-33 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 23 | 45 | 3.0E-33 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 2 | 22 | 3.0E-33 | IPR020575 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 195 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52640.1 | heat shock protein 90.1. Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. | 0 |
| RefSeq | XP_021592620.1 | heat shock protein 83 [Manihot esculenta] | 0 |
| P27323 | Heat shock protein 90-1 OS=Arabidopsis thaliana OX=3702 GN=HSP90-1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8S0QB37 | Heat shock 83 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A047856 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology