Basic Information
Locus ID:
jg33929
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 459909 | 462855 | + | jg33929 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 36,428.92 Da | 39.89 | 73.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 60 | 98 | 8.61568E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 104 | 303 | 1.9E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 101 | 2.21E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 115 | 307 | 4.64E-47 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 173 | 303 | 2.9E-35 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 104 | 1.8E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 170 | 1.1E-16 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 115 | 175 | 14.364697 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 62 | 98 | 8.948558 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011075989.1 | E3 ubiquitin-protein ligase SINAT5 [Sesamum indicum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T1X7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105160356 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology