Basic Information
Locus ID:
jg33589
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_21037_HRSCAF_21136 | 1550 | 4432 | + | jg33589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 91,377.55 Da | 34.16 | 85.52 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 12 | 292 | 1.50519E-132 | - |
| CDD | cd02440 | AdoMet_MTases | 695 | 771 | 1.18926E-7 | - |
| Pfam | PF05958 | tRNA (Uracil-5-)-methyltransferase | 763 | 835 | 8.3E-10 | IPR010280 |
| Pfam | PF05958 | tRNA (Uracil-5-)-methyltransferase | 674 | 743 | 2.5E-6 | IPR010280 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 9 | 285 | 1.6E-67 | IPR001926 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 534 | 837 | 1.25E-62 | IPR029063 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 477 | 525 | 3.37E-11 | IPR012340 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 2 | 294 | 8.91E-90 | IPR036052 |
| Gene3D | G3DSA:2.40.50.140 | - | 461 | 540 | 2.3E-19 | - |
| Gene3D | G3DSA:3.40.50.1100 | - | 9 | 293 | 2.6E-107 | IPR036052 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 541 | 611 | 2.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1100 | - | 39 | 157 | 2.6E-107 | IPR036052 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 644 | 837 | 1.5E-49 | - |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 8 | 293 | 1.3E-114 | IPR005856 |
| TIGRFAM | TIGR01138 | cysM: cysteine synthase B | 6 | 294 | 3.9E-137 | IPR005858 |
| ProSiteProfiles | PS50926 | TRAM domain profile. | 467 | 526 | 9.800363 | IPR002792 |
| ProSiteProfiles | PS51687 | SAM-dependent methyltransferase RNA m(5)U-type domain profile. | 546 | 839 | 56.914104 | IPR010280 |
| ProSitePatterns | PS01230 | RNA methyltransferase trmA family signature 1. | 769 | 799 | - | IPR030390 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 34 | 52 | - | IPR001216 |
| ProSitePatterns | PS01231 | RNA methyltransferase trmA family signature 2. | 821 | 831 | - | IPR030391 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 458 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59760.3 | O-acetylserine (thiol) lyase isoform C. Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC | 0 |
| RefSeq | XP_013904663.1 | cysteine synthase B [Monoraphidium neglectum] | 0 |
| Q9I526 | Cysteine synthase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=cysM PE=3 SV=1 | 0 | |
| TrEMBL | A0A2E5FYS6 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Xanthomonadales bacterium OX=2006849 GN=rlmD PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology