Basic Information
Locus ID:
jg33121
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 10498834 | 10504863 | - | jg33121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 54,730.29 Da | 49.43 | 92.02 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 210 | 2.5E-15 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 226 | 272 | 5.6E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.4E-6 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 381 | 2.89E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 279 | 2.63E-49 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 151 | 1.3E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 293 | 2.6E-26 | IPR036770 |
| SMART | SM00184 | ring_2 | 324 | 373 | 0.0082 | IPR001841 |
| SMART | SM00248 | ANK_2a | 120 | 150 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 183 | 212 | 7.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 226 | 255 | 6.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.24 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 2.6E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 120 | 141 | 10.01842 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.452829 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 120 | 141 | 9.993605 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 226 | 258 | 11.91483 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 374 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 8.97673 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 226 | 257 | 10.709951 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.55587 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 183 | 215 | 13.11678 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 183 | 211 | 12.169178 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 339 | 348 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 121 | 136 | 8.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 199 | 213 | 8.6E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_011069845.1 | probable E3 ubiquitin-protein ligase XBOS32 [Sesamum indicum] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SS00 | probable E3 ubiquitin-protein ligase XBOS32 OS=Sesamum indicum OX=4182 GN=LOC105155640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology