Basic Information
Locus ID:
jg3308
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1328336 | 1333336 | + | jg3308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 30,650.59 Da | 50.81 | 63.40 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02953 | Tim10/DDP family zinc finger | 222 | 280 | 9.3E-20 | IPR004217 |
| Pfam | PF12906 | RING-variant domain | 110 | 161 | 3.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 165 | 1.41E-9 | - |
| SUPERFAMILY | SSF144122 | Tim10-like | 226 | 283 | 1.15E-18 | IPR035427 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 171 | 2.4E-14 | IPR013083 |
| Gene3D | G3DSA:1.10.287.810 | Mitochondrial import inner membrane translocase subunit tim13 like domains | 214 | 283 | 5.1E-23 | IPR035427 |
| SMART | SM00744 | ringv_2 | 109 | 162 | 5.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 102 | 168 | 15.627707 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29530.1 | Tim10/DDP family zinc finger protein. Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. | 0 |
| RefSeq | XP_011094945.1 | uncharacterized protein LOC105174514 [Sesamum indicum] | 0 |
| Q9ZW33 | Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana OX=3702 GN=TIM10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UAW8 | uncharacterized protein LOC105174514 OS=Sesamum indicum OX=4182 GN=LOC105174514 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14815, jg3308 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6938, gene_8091 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027929 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157010, BVRB_7g172970 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1663, Sbi_jg2167, Sbi_jg34344, Sbi_jg34885 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2609, Seu_jg3082 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003291, GOSA_00005890 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71113, Sgl72880, Sgl74696, Sgl76415 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005444, gene:ENSEOMG00000008254 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0022960, CQ.Regalona.r1.7BG0025580 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G04156 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715503, gene-LOC103722641 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.62.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G15930 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G29530.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014310.2N, BniB06g018750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1967 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2044 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07680 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00033.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15050 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-505 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1166 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002817, Pov_00006456, Pov_00013997 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20430 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.698, BH01.305, BH03.825, CH01.144, CH03.923 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0210090, gene-QOZ80_3BG0255240 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060610 |
| Poaceae | Oryza coarctata | 3 | Oco05G027720, Oco06G028680, Oco14G005110 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g61019.1, LOC_Os07g13950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G026500, gene-BS78_02G109600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105863 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G001250, Chr04G031690, Chr07G030760, Chr12G032900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G773300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG069370, gene_TRIDC5BG074940 |
| Poaceae | Triticum aestivum | 1 | TraesCS5D02G501200.1 |
| Poaceae | Zea mays | 2 | Zm00001eb063090_P002, Zm00001eb211450_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14536, nbis-gene-16640, nbis-gene-49407 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g140, Zma_g2460, Zma_g26800, Zma_g4959 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.786, evm.TU.LG15.143, evm.TU.LG24.922 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g15650, gene.Posoc08g13340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.847 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19071 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19640 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16228 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.503 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015579 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4423 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20933 |
| Salicaceae | Populus euphratica | 1 | populus_peu02068 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605833, gene-LOC132630615 |
| Solanaceae | Solanum chilense | 2 | SOLCI003087100, SOLCI004672600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023423, gene-LOC107029406 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3301 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0151 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11720.v3.1 |