Basic Information
Locus ID:
jg33012
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 7232532 | 7233911 | + | jg33012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 41,670.80 Da | 25.79 | 83.32 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 29 | 367 | 3.78909E-143 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 35 | 361 | 9.0E-77 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 31 | 363 | 6.77E-73 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 268 | 332 | 3.21E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 49 | 361 | 1.1E-102 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 267 | 332 | 1.1E-102 | IPR029070 |
| SMART | SM00636 | 2g34 | 31 | 361 | 1.2E-96 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 31 | 376 | 67.390137 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 138 | 146 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19800.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_011078612.1 | acidic mammalian chitinase-like [Sesamum indicum] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9TDB8 | acidic mammalian chitinase-like OS=Sesamum indicum OX=4182 GN=LOC105162303 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology