Basic Information
Locus ID:
jg33
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_20429_HRSCAF_20525 | 520 | 1203 | + | jg33 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 24,018.06 Da | 41.64 | 105.26 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01565 | FAD binding domain | 1 | 75 | 5.4E-17 | IPR006094 |
| Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 112 | 226 | 4.4E-20 | IPR004113 |
| SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 2 | 112 | 1.64E-35 | IPR036318 |
| SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 85 | 228 | 1.18E-23 | IPR016164 |
| Gene3D | G3DSA:3.30.465.10 | - | 1 | 130 | 3.5E-33 | IPR016169 |
| ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 1 | 111 | 14.513347 | IPR016166 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06580.1 | FAD-linked oxidases family protein. Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo. | 0 |
| RefSeq | XP_020213890.1 | D-lactate dehydrogenase [cytochrome], mitochondrial [Cajanus cajan] | 0 |
| P0AEQ0 | Glycolate oxidase subunit GlcD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=glcD PE=3 SV=1 | 0 | |
| TrEMBL | A0A423PSL2 | FAD-binding protein OS=Salinisphaera japonica YTM-1 OX=1209778 GN=SAJA_07560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33, jg39414 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16800 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g129540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14176, Sbi_jg53432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10077 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025384 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34782, Sgl40182 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002703, gene:ENSEOMG00000027896 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0027330, CQ.Regalona.r1.6BG0028740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30209420 |
| Apiaceae | Apium graveolens | 1 | Ag4G00443 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G013020 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1999.V1.1, AsparagusV1_03.2108.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G00935 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G36400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000690m.g.v1.0, Thhalv10024815m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g087940.2N, BniB05g002310.2N, BniB08g049200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0255 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0281 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0029s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2415 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014327 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36458 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.450, BH03.546, CH03.633 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0558680, gene-QOZ80_7BG0589840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042888 |
| Poaceae | Oryza coarctata | 2 | Oco13G002900, Oco14G003180 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g08950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G059800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000120, Chr28G002210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G775800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065280, gene_TRIDC2BG069790 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G457900.2, TraesCS2B02G480200.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb302200_P006 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26772, nbis-gene-57557 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6114 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1672, evm.TU.LG12.302 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2063 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17062 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13790 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11746 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1257 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007030 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15625 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3046 |
| Salicaceae | Populus euphratica | 1 | populus_peu23639 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621298 |
| Solanaceae | Solanum chilense | 1 | SOLCI004703700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008794 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0791 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04780.v3.1 |