Basic Information
Locus ID:
jg32942
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 4539781 | 4556920 | - | jg32942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 71,191.27 Da | 53.51 | 74.68 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 139 | 272 | 4.84042E-62 | - |
| CDD | cd17920 | DEXHc_RecQ | 1 | 138 | 5.55841E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 158 | 261 | 3.5E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 276 | 347 | 4.4E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 130 | 2.66E-14 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 137 | 372 | 2.11E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 139 | 365 | 1.2E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 138 | 9.3E-50 | IPR027417 |
| SMART | SM00490 | helicmild6 | 182 | 263 | 6.1E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 351 | 2.7E-109 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 158 | 307 | 17.495029 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 131 | 14.70278 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 635 | - | - |
| Coils | Coil | Coil | 433 | 460 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_020549636.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Sesamum indicum] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V0E0 | ATP-dependent DNA helicase OS=Sesamum indicum OX=4182 GN=LOC105162015 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology