Basic Information
Locus ID:
jg3273
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1084499 | 1093574 | + | jg3273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 97,685.45 Da | 46.16 | 86.43 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 659 | 720 | 3.37669E-11 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 248 | 363 | 5.6E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 658 | 720 | 7.1E-7 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 388 | 4.76E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 658 | 720 | 2.32E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 655 | 726 | 1.4E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 403 | 2.6E-27 | IPR023214 |
| SMART | SM00577 | forpap2 | 239 | 372 | 2.4E-8 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 657 | 721 | 3.0E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 137 | 385 | 16.839127 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 656 | 722 | 13.591892 | IPR014720 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_011094992.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Sesamum indicum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9UAX7 | protein-serine/threonine phosphatase OS=Sesamum indicum OX=4182 GN=LOC105174550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology