Basic Information
Locus ID:
jg32649
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 1310924 | 1316839 | - | jg32649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 53,172.47 Da | 55.16 | 71.50 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00230 | Major intrinsic protein | 107 | 183 | 4.8E-15 | IPR000425 |
| Pfam | PF00230 | Major intrinsic protein | 15 | 100 | 1.6E-18 | IPR000425 |
| Pfam | PF14599 | Zinc-ribbon | 417 | 457 | 3.8E-14 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 230 | 311 | 1.4E-18 | IPR008913 |
| Pfam | PF13445 | RING-type zinc-finger | 366 | 410 | 7.9E-7 | IPR027370 |
| SUPERFAMILY | SSF81338 | Aquaporin-like | 13 | 184 | 4.19E-35 | IPR023271 |
| SUPERFAMILY | SSF57850 | RING/U-box | 365 | 417 | 5.74E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 302 | 359 | 3.01E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 227 | 300 | 1.83E-16 | IPR037274 |
| Gene3D | G3DSA:1.20.1080.10 | Glycerol uptake facilitator protein. | 4 | 98 | 1.0E-18 | IPR023271 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 352 | 432 | 2.8E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.1080.10 | Glycerol uptake facilitator protein. | 99 | 189 | 1.7E-14 | IPR023271 |
| SMART | SM00184 | ring_2 | 366 | 412 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 223 | 299 | 24.701099 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 301 | 365 | 33.501331 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 366 | 413 | 11.869652 | IPR001841 |
| PRINTS | PR00783 | Major intrinsic protein family signature | 21 | 40 | 8.2E-15 | IPR000425 |
| PRINTS | PR00783 | Major intrinsic protein family signature | 65 | 89 | 8.2E-15 | IPR000425 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011077305.1 | E3 ubiquitin-protein ligase MIEL1-like [Sesamum indicum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9P2 | E3 ubiquitin-protein ligase MIEL1-like OS=Sesamum indicum OX=4182 GN=LOC105161350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology