Basic Information
Locus ID:
jg32560
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 651030 | 655091 | + | jg32560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 103,216.15 Da | 55.51 | 65.11 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 556 | 593 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 408 | 438 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 702 | 738 | 0.0045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 515 | 551 | 6.6E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 402 | 923 | 7.73E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 392 | 775 | 2.6E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 551 | 9.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 696 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 697 | 738 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 439 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 885 | 924 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 634 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 593 | 3.6E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 554 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 560 | 594 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 407 | 448 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 560 | 594 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 407 | 441 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 560 | 14.819399 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 715 | 743 | 10.575287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 538 | 552 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 426 | 440 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 538 | 552 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 580 | 594 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011077463.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC105161466 [Sesamum indicum] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A022QH63 | WD repeat-containing protein 44-like OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a000854mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology