Basic Information
Locus ID:
jg32551
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Putative zinc finger in N-recognin (UBR box)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr22 | 578291 | 589493 | + | jg32551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 168,020.77 Da | 51.67 | 86.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16482 | RING-H2_UBR1_like | 1344 | 1404 | 6.80048E-25 | - |
| Pfam | PF02207 | Putative zinc finger in N-recognin (UBR box) | 107 | 173 | 1.6E-18 | IPR003126 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 862 | 946 | 1.82E-5 | IPR036390 |
| Gene3D | G3DSA:1.10.10.2670 | - | 857 | 951 | 1.8E-5 | IPR042065 |
| Gene3D | G3DSA:2.10.110.30 | - | 107 | 175 | 4.1E-22 | - |
| SMART | SM00396 | push_1 | 105 | 174 | 1.9E-19 | IPR003126 |
| ProSiteProfiles | PS51157 | Zinc finger UBR-type profile. | 105 | 175 | 10.514117 | IPR003126 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02310.1 | proteolysis 6. Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | 0 |
| RefSeq | XP_011077478.1 | E3 ubiquitin-protein ligase PRT6 isoform X3 [Sesamum indicum] | 0 |
| F4KCC2 | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T5R3 | E3 ubiquitin-protein ligase OS=Sesamum indicum OX=4182 GN=LOC105161474 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32551, jg32552 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037944 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205650 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg51062, Sbi_jg51063, Sbi_jg60136 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24314 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015831, GOSA_00015832 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78415, Sgl80918, Sgl80924 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017294, gene:ENSEOMG00000039439 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.9AG0004040, CQ.Regalona.r1.9BG0018160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30270610 |
| Apiaceae | Apium graveolens | 1 | AgUnG01069 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G015980, COCNU_16G007970 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703591, gene-LOC103721993, gene-LOC120109804 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.194.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G10760, Ftri15G27234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G02310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40140.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g057730.2N, BniB04g005100.2N, BniB08g000620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1156 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1186 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g17950, gene.Cymno05g19270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0255s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g34130, gene.Thate01g34140, gene.Thate01g34150 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1232 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002310, Pov_00002312, Pov_00003358 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10666, Lb2G10667 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.671, BH02.674, CH02.772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009690, gene-QOZ80_1BG0058290 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0230290.2, HORVU.MOREX.r3.3HG0230560.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030129, gene-QYE76_048573 |
| Poaceae | Oryza coarctata | 2 | Oco01G001910, Oco02G001900 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g05500.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G065000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205838 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G023500, Chr03G004310, Chr05G014380, Chr08G000830 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G132200, Tel3E01G133400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG008510, gene_TRIDC3AG008660 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G072400.2, TraesCS3A02G073400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb124390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13023 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7602 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.297, evm.TU.LG26.748 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g39430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.749 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4435 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9887 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9480 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1093 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006026 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12705 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5968, nbisL1-mrna-5969 |
| Salicaceae | Populus euphratica | 1 | populus_peu11296 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607049, gene-LOC132630356 |
| Solanaceae | Solanum chilense | 2 | SOLCI002180800, SOLCI002988400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002081, gene-LOC107031080 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_5654, gene_6817, gene_6818 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0466 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25280.v3.1 |