Basic Information
Locus ID:
jg3246
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
PDC3
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 884245 | 886701 | - | jg3246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 65,096.77 Da | 32.01 | 92.55 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 408 | 590 | 3.15779E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 49 | 208 | 1.02195E-90 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 578 | 9.1E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 46 | 212 | 1.3E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 243 | 360 | 6.0E-19 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 46 | 220 | 1.28E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 238 | 385 | 5.38E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 410 | 602 | 3.87E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 42 | 219 | 4.6E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 233 | 395 | 1.5E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 401 | 592 | 4.5E-56 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 41 | 602 | 1.9E-210 | IPR012110 |
| Coils | Coil | Coil | 551 | 571 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_011095042.1 | pyruvate decarboxylase 1 [Sesamum indicum] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HQQ1 | pyruvate decarboxylase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology