Basic Information
Locus ID:
jg32253
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_17591_HRSCAF_17670 | 1471 | 2342 | + | jg32253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 26,823.86 Da | 27.57 | 101.17 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00714 | GFAT | 2 | 172 | 3.6885E-91 | - |
| Pfam | PF13522 | Glutamine amidotransferase domain | 64 | 139 | 4.8E-17 | - |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 191 | 5.15E-56 | IPR029055 |
| SUPERFAMILY | SSF53697 | SIS domain | 184 | 228 | 2.45E-7 | - |
| Gene3D | G3DSA:3.40.50.10490 | - | 198 | 247 | 7.6E-9 | - |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 2 | 145 | 4.1E-51 | IPR029055 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 2 | 247 | 31.906273 | IPR017932 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24090.1 | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases. | 0 |
| RefSeq | XP_002500573.1 | predicted protein [Micromonas commoda] | 0 |
| Q5QZH5 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=glmS PE=3 SV=3 | 0 | |
| TrEMBL | A0A2E0IV81 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Salinisphaera sp. OX=1914330 GN=glmS PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1584, jg29007, jg32253 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16408 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035683 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21728, Sbi_jg22091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16015 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008633, GOSA_00008634 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63038, Sgl67660 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017131, gene:ENSEOMG00000017620 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0017260, CQ.Regalona.r1.2AG0017270 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30096340, pistato.v30096470 |
| Apiaceae | Apium graveolens | 1 | Ag1G00255 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705007, gene-LOC103709035 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.830.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G22610, Ftri12G14725 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002424m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037190.2N, BniB03g025350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2885 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3034 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0953s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g09430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1599 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014897 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23424 |
| Poaceae | Echinochloa crus-galli | 5 | AH04.164, AH07.1208, BH04.184, CH04.194, CH05.186 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0380200, gene-QOZ80_5BG0427280 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0356370.1, HORVU.MOREX.r3.4HG0356380.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003413, gene-QYE76_065176 |
| Poaceae | Oryza coarctata | 4 | Oco21G000440, Oco22G001190, Oco23G001210, Oco24G000550 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g03900.1, LOC_Os12g03720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G009700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103696, Pt_Chr0103701, Pt_Chr0702959 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G021550, Chr06G023150, Chr16G008920, Chr17G007930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G204100, Tel4E01G204200, Tel5E01G245600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029900, gene_TRIDC4BG020700 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G187100.2, TraesCS4B02G130800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163520_P001, Zm00001eb405240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25726 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24682 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1015, evm.TU.LG08.526, evm.TU.LG15.935 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1493 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12789, nbisL1-mrna-29309 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13699, nbisL1-mrna-20509 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22501 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.13, evm.TU.utg000010l.447 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000737, Maker00002355 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1159, nbisL1-mrna-2294 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20484, nbisL1-mrna-24230 |
| Salicaceae | Populus euphratica | 2 | populus_peu25610, populus_peu25615 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644800 |
| Solanaceae | Solanum chilense | 1 | SOLCI002469000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023341 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11745 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1312 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30050.v3.1 |