Basic Information
Locus ID:
jg32188
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 13021742 | 13024286 | + | jg32188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 65,112.89 Da | 32.03 | 91.41 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 1.03115E-92 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 3.50371E-86 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 1.4E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 212 | 2.5E-36 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 358 | 7.9E-21 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 408 | 601 | 1.97E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 219 | 1.57E-45 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 383 | 9.38E-33 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 217 | 2.7E-62 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 2.8E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 399 | 590 | 1.8E-55 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 1.4E-208 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_011095042.1 | pyruvate decarboxylase 1 [Sesamum indicum] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UKV3 | pyruvate decarboxylase OS=Sesamum indicum OX=4182 GN=LOC105174592 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology