Basic Information
Locus ID:
jg32101
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 12363652 | 12372258 | - | jg32101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 115,072.98 Da | 43.63 | 77.80 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 692 | 732 | 7.66552E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 417 | 472 | 8.8E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 626 | 675 | 2.6E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 688 | 739 | 9.52E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 763 | 821 | 1.53E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 918 | 1008 | 8.96E-8 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 862 | 1029 | 1.1E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 682 | 749 | 3.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 764 | 823 | 1.7E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 765 | 822 | 7.4E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 692 | 733 | 4.0E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 690 | 735 | 10.006199 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 763 | 824 | 8.573299 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 766 | 821 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_020549569.1 | uncharacterized protein LOC105161451 [Sesamum indicum] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8UZZ0 | uncharacterized protein LOC105161451 OS=Sesamum indicum OX=4182 GN=LOC105161451 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology