Basic Information
Locus ID:
jg32011
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 11653844 | 11656244 | + | jg32011 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 31,170.71 Da | 52.55 | 59.85 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 194 | 252 | 1.1E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 11 | 92 | 1.1E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 146 | 189 | 2.2E-7 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 83 | 140 | 9.42E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 195 | 1.45E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 7 | 81 | 1.57E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 210 | 4.2E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 218 | 261 | 2.7E-18 | - |
| SMART | SM00184 | ring_2 | 147 | 189 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 190 | 12.031935 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 82 | 146 | 33.60994 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 4 | 80 | 26.090252 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011077305.1 | E3 ubiquitin-protein ligase MIEL1-like [Sesamum indicum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9P2 | E3 ubiquitin-protein ligase MIEL1-like OS=Sesamum indicum OX=4182 GN=LOC105161350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology