Basic Information
Locus ID:
jg31921
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 10820877 | 10822049 | + | jg31921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 42,975.43 Da | 54.01 | 104.56 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 1 | 35 | 4.15605E-16 | - |
| Pfam | PF04564 | U-box domain | 1 | 57 | 2.3E-13 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 74 | 373 | 1.18E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 63 | 2.38E-17 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 73 | 383 | 3.4E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 65 | 1.0E-18 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 55 | 6.5E-18 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 62 | 32.253189 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011077807.1 | E3 ubiquitin-protein ligase PUB23 [Sesamum indicum] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T2H9 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105161716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology