Basic Information
Locus ID:
jg31792
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 9434636 | 9435115 | - | jg31792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 17,798.49 Da | 62.77 | 95.66 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 85 | 128 | 1.11734E-11 | - |
| Pfam | PF13639 | Ring finger domain | 85 | 128 | 8.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 134 | 2.43E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 139 | 1.1E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 85 | 127 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 85 | 128 | 12.710573 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011093908.1 | probable E3 ubiquitin-protein ligase XERICO [Sesamum indicum] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9U8T4 | probable E3 ubiquitin-protein ligase XERICO OS=Sesamum indicum OX=4182 GN=LOC105173737 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15299, jg31792, jg3767 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005470, COCNU_08G003290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714483, gene-LOC103717787 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2712.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G43430.1, AT5G20885.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003086m.g.v1.0, Thhalv10014811m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g17820.v2.2, Sp6g23640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042050.2N, BniB05g042690.2N, BniB08g010700.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12360 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g10350, gene.Thate01g10370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-211 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.720 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003948 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26280 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.630, evm.TU.Scaffold_4_RagTag.1075 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13857 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12089 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8886 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.254, add.evm.TU.utg000033l.141 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17522, nbisL1-mrna-18301 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-8077, nbisL1-mrna-9393 |
| Salicaceae | Populus euphratica | 1 | populus_peu12546 |
| Zosteraceae | Zostera marina | 1 | Zosma02g20260.v3.1 |