Basic Information
Locus ID:
jg31770
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 9162049 | 9168235 | + | jg31770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 44,204.96 Da | 45.71 | 68.81 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 49 | 119 | 4.72681E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 133 | 207 | 7.76544E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 253 | 327 | 4.23395E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 1.1E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 115 | 2.2E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 321 | 1.5E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 124 | 215 | 8.73E-29 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 36 | 125 | 5.1E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 332 | 1.11E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 130 | 211 | 1.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 230 | 332 | 7.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 129 | 1.4E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 48 | 117 | 1.6E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 133 | 206 | 2.5E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 254 | 323 | 9.8E-19 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 133 | 206 | 4.1E-4 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 254 | 323 | 7.8 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 121 | 15.016313 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 327 | 15.203922 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | 17.711065 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 250 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011093867.1 | oligouridylate-binding protein 1 isoform X1 [Sesamum indicum] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GT05 | Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology